Prof. Claudio Rivetti

Professore Ordinario

Pubblicazioni selezionate

Gardella, M, Carrieri, P, Salvadeo, P, Pavone, S, Giombi, G, Ramigni, M, & Rivetti, C. (2024) Development of a Low-Cost Web-Based Information System for Managing a University Department Chemical Warehouse, Laboratories, 1, 59-71. doi: 10.3390/laboratories1010004; iris: 11381/2980833

Merici, G, Amidani, D, Dieci, G, & Rivetti, C. (2024) A New Strategy to Investigate RNA:DNA Triplex Using Atomic Force Microscopy, International Journal of Molecular Sciences, 25. doi: 10.3390/ijms25053035; iris: 11381/2975133

Mori, G, Liuzzi, A, Ronda, L, Di Palma, M, Chegkazi, M. S, Bui, S, Garcia-Maya, M, Ragazzini, J, Malatesta, M, Della Monica, E, Rivetti, C, Antin, P. B, Bettati, S, Steiner, R. A, & Percudani, R. (2023) Cysteine Enrichment Mediates Co-Option of Uricase in Reptilian Skin and Transition to Uricotelism, Molecular Biology and Evolution, 40. doi: 10.1093/molbev/msad200; iris: 11381/2974193

Zangelmi, E, Ruffolo, F, Dinhof, T, Gerdol, M, Malatesta, M, Chin, J, Rivetti, C, Secchi, A, Pallitsch, K, & Peracchi, A. (2023) Deciphering the role of recurrent FAD-dependent enzymes in bacterial phosphonate catabolism, Iscience, 26. doi: 10.1016/j.isci.2023.108108; iris: 11381/2972032

Bonini, A. A, Maggi, S, Mori, G, Carnuccio, D, Delfino, D, Cavazzini, D, Ferrari, A, Levante, A, Yamaguchi, Y, Rivetti, C, & Folli, C. (2022) Functional characterization and transcriptional repression by Lacticaseibacillus paracasei DinJ-YafQ, Applied Microbiology and Biotechnology, 106, 7113-7128. doi: 10.1007/s00253-022-12195-4; iris: 11381/2931651

Mori, G, Delfino, D, Pibiri, P, Rivetti, C, & Percudani, R. (2022) Origin and significance of the human DNase repertoire, Scientific Reports, 12. doi: 10.1038/s41598-022-14133-w; iris: 11381/2928972

Maggi, S, Ferrari, A, Yabre, K, Bonini, A. A, Rivetti, C, & Folli, C. (2021) Strategies to investigate membrane damage, nucleoid condensation, and rnase activity of bacterial toxin–antitoxin systems, Methods and Protocols, 4. doi: 10.3390/mps4040071; iris: 11381/2901785

Bravo, L, Nepogodiev, D, Glasbey, J. C, Elizabeth, L, Simoes, J. F, Kamarajah, S. K, Picciochi, M, Abbott, T. E, Ademuyiwa, A. O, Arnaud, A. P, Agarwal, A, Brar, A, Elhadi, M, Mazingi, D, Cardoso, V. R. et al. (2021) Machine learning risk prediction of mortality for patients undergoing surgery with perioperative SARS-CoV-2: the COVIDSurg mortality score, British Journal of Surgery. doi: 10.1093/bjs/znab183; iris: 11381/2897444

Delfino, D, Mori, G, Rivetti, C, Grigoletto, A, Bizzotto, G, Cavozzi, C, Malatesta, M, Cavazzini, D, Pasut, G, & Percudani, R. (2021) Actin-Resistant DNase1L2 as a Potential Therapeutics for CF Lung Disease, Biomolecules, 11. doi: 10.3390/biom11030410; iris: 11381/2893424

Guo, X, Luo, S, Amidani, D, Rivetti, C, Pieraccini, G, Pioselli, B, Catinella, S, Murgia, X, Salomone, F, Xu, Y, Dong, Y, & Sun, B. (2020) In vitro characterization and in vivo comparison of the pulmonary outcomes of Poractant alfa and Calsurf in ventilated preterm rabbits, Plos One, 15. doi: 10.1371/journal.pone.0230229; iris: 11381/2874093

Bisceglie, F, Orsoni, N, Pioli, M, Bonati, B, Tarasconi, P, Rivetti, C, Amidani, D, Montalbano, S, Buschini, A, & Pelosi, G. (2019) Cytotoxic activity of copper(ii), nickel(ii) and platinum(ii) thiosemicarbazone derivatives: Interaction with DNA and the H2A histone peptide, Metallomics, 11, 1729-1742. doi: 10.1039/c9mt00166b; iris: 11381/2867239

Maggi, S, Yabre, K, Ferrari, A, Lazzi, C, Kawano, M, Rivetti, C, & Folli, C. (2019) Functional characterization of the type I toxin Lpt from Lactobacillus rhamnosus by fluorescence and atomic force microscopy, Scientific Reports, 9. doi: 10.1038/s41598-019-51523-z; iris: 11381/2865902

Ferrari, A, Maggi, S, Montanini, B, Levante, A, Lazzi, C, Yamaguchi, Y, Rivetti, C, & Folli, C. (2019) Identification and first characterization of DinJ-YafQ toxin-antitoxin systems in Lactobacillus species of biotechnological interest, Scientific Reports, 9. doi: 10.1038/s41598-019-44094-6; iris: 11381/2862406

Dutta, S, Rivetti, C, Gassman, N. R, Young, C. G, Jones, B. T, Scarpinato, K, & Guthold, M. (2018) Analysis of single, cisplatin-induced DNA bends by atomic force microscopy and simulations, Journal of Molecular Recognition. doi: 10.1002/jmr.2731; iris: 11381/2848662

Amidani, D, Tramonti, A, Canosa, A. V, Campanini, B, Maggi, S, Milano, T, Di Salvo, M. L, Pascarella, S, Contestabile, R, Bettati, S, & Rivetti, C. (2017) Study of DNA binding and bending by Bacillus subtilis GabR, a PLP-dependent transcription factor, Biochimica et Biophysica Acta-General Subjects, 1861, 3474-3489. doi: 10.1016/j.bbagen.2016.09.013; iris: 11381/2819673

Folli, C, Levante, A, Percudani, R, Amidani, D, Bottazzi, S, Ferrari, A, Rivetti, C, Neviani, E, & Lazzi, C. (2017) Toward the identification of a type i toxin-antitoxin system in the plasmid DNA of dairy Lactobacillus rhamnosus, Scientific Reports, 7. doi: 10.1038/s41598-017-12218-5; iris: 11381/2830451

Ricci, F, Catozzi, C, Murgia, X, Rosa, B, Amidani, D, Lorenzini, L, Bianco, F, Rivetti, C, Catinella, S, Villetti, G, Civelli, M, Pioselli, B, Dani, C, & Salomone, F. (2017) Physiological, biochemical, and biophysical characterization of the lung-lavaged spontaneously-breathing rabbit as a model for respiratory distress syndrome, Plos One, 12. doi: 10.1371/journal.pone.0169190; iris: 11381/2841538

Roncarati, D, Pelliciari, S, Doniselli, N, Maggi, S, Vannini, A, Valzania, L, Mazzei, L, Zambelli, B, Rivetti, C, & Danielli, A. (2016) Metal-responsive promoter DNA compaction by the ferric uptake regulator, Nature Communications, 7. doi: 10.1038/ncomms12593; iris: 11381/2819665

Doniselli, N, Rodriguez Aliaga, P, Amidani, D, Bardales, J. A, Bustamante, C, Guerra, D. G, & Rivetti, C. (2015) New insights into the regulatory mechanisms of ppGpp and DksA on Escherichia coli RNA polymerase-promoter complex, Nucleic Acids Research, 43, 5249-5262. doi: 10.1093/nar/gkv391; iris: 11381/2816682

Savi, M, Rossi, S, Bocchi, L, Gennaccaro, L, Cacciani, F, Perotti, A, Amidani, D, Alinovi, R, Goldoni, M, Aliatis, I, Lottici, P. P, Bersani, D, Campanini, M, Pinelli, S, Petyx, M. et al. (2014) Titanium dioxide nanoparticles promote arrhythmias via a direct interaction with rat cardiac tissue, Particle and Fibre Toxicology, 11. doi: 10.1186/s12989-014-0063-3; iris: 11381/2784194

Buschini, A, Pinelli, S, Alinovi, R, Mussi, F, Bisceglie, F, Rivetti, C, Doniselli, N, & Pelosi, G. (2014) Unravelling mechanisms behind the biological activity of bis(S-citronellalthiosemicarbazonato)nickel(ii), Metallomics, 6, 783-792. doi: 10.1039/c3mt00345k; iris: 11381/2695882

Miriam, Z, Erika, S, Maria Emanuela, F, Rivetti, C, Grolli, S, Giorgio, G, Ramoni, R, & Domenico, C. (2012) Epifluorescence and atomic force microscopy: Two innovative applications for studying phage-host interactions in Lactobacillus helveticus, Journal of Microbiological Methods, 88 (1), 41-46. doi: 10.1016/j.mimet.2011.10.00; iris: 11381/2398741

Foroni, E, Serafini, F, Amidani, D, Turroni, F, He, F, Bottacini, F, O’Connell Motherway, M, Viappiani, A, Zhang, Z, Rivetti, C, Van Sinderen, D, & Ventura, M. (2011) Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium, Microbial Cell Factories, 10 Suppl 1:S16, 1-13. doi: 10.1186/1475-2859-10-S1-S16; iris: 11381/2350581

Scaltriti, E, Launay, H, Genois, M. M, Bron, P, Rivetti, C, Grolli, S, Ploquin, M, Campanacci, V, Tegoni, M, Cambillau, C, Moineau, S, & Masson, J. Y. (2011) Lactococcal phage p2 ORF35-Sak3 is an ATPase involved in DNA recombination and AbiK mechanism, Molecular Microbiology, 80 (1), 102-116. doi: 10.1111/j.1365-2958.2011.07561.x; iris: 11381/2363125

Scaltriti, E, Grolli, S, Rivetti, C, Masson, J. Y, Tegoni, M, Moineau, S, Cambillau, C, & Ramoni, R. (2010) From dairy products to molecular mechanisms: characterization of Lactococcus lactis phage proteins involved in Homologous Recombination and Abortive Infection systems, The FEBS Journal, 277, 298-298. iris: 11381/2524666

Scaltriti, E, Moineau, S, Launay, H, Masson, J. Y, Rivetti, C, Ramoni, R, Campanacci, V, Tegoni, M, & Cambillau, C. (2010) Deciphering the function of lactococcal phage ul36 Sak domains, Journal of Structural Biology, 170(3), 462-469. doi: 10.1016/j.jsb.2009.12.021; iris: 11381/2307588

Scaltriti, E, Tegoni, M, Rivetti, C, Launay, H, Masson, J, Magadan, A, Tremblay, D, Moineau, S, Ramoni, R, LichièRe, J, Campanacci, V, Cambillau, C, & Ortiz LombardÍA, M. (2009) Structure and function of phage p2 ORF34(p2), a new type of single-stranded DNA binding protein, Molecular Microbiology, 73, 1156-1170. doi: 10.1111/j.1365-2958.2009.06844.x; iris: 11381/2292130

Rivetti, C. (2009) A simple and optimized length estimator for digitized DNA contours, Cytometry. Part a, 75A, 854-861. doi: 10.1002/cyto.a.20781; iris: 11381/2292131

Folli, C, Mangiarotti, L, Folloni, S, Alfieri, B, Gobbo, M, Berni, R, & Rivetti, C. (2008) Specificity of the TraA-DNA Interaction in the Regulation of the pPD1-Encoded Sex Pheromone Response in Enterococcus faecalis, Journal of Molecular Biology, 380, 932-945. doi: 10.1016/j.jmb.2008.05.058; iris: 11381/1865798

Mangiarotti, L, Cellai, S, Ross, W, Bustamante, C, & Rivetti, C. (2008) Sequence-Dependent Upstream DNA-RNA Polymerase Interactions in the Open Complex with lambdaP(R) and lambdaP(RM) Promoters and Implications for the Mechanism of Promoter Interference, Journal of Molecular Biology, 385, 748-760. doi: 10.1016/j.jmb.2008.11.019; iris: 11381/1895249

Ceci, P, Mangiarotti, L, Rivetti, C, & Chiancone, E. (2007) The neutrophil-activating Dps protein of Helicobacter pylori, HP-NAP, adopts a mechanism different from Escherichia coli Dps to bind and condense DNA, Nucleic Acids Research, 35, 2247-2256. doi: 10.1093/nar/gkm077; iris: 11381/1631059

Bossi, A, Rivetti, C, Mangiarotti, L, Whitcombe, M, Turner, A, & Piletsky, S. (2007) Patterned gallium surfaces as molecular mirrors, Biosensors & Bioelectronics, 23, 290-294. iris: 11381/1657402

Cellai, S, Mangiarotti, L, Vannini, N, Naryshkin, N, Kortkhonjia, E, Ebright, R. H, & Rivetti, C. (2007) Upstream promoter sequences and alphaCTD mediate stable DNA wrapping within the RNA polymerase-promoter open complex, Embo Reports, 8, 271-278. doi: 10.1038/sj.embor.7400888; iris: 11381/1631060

Moretto, N, Bolchi, A, Rivetti, C, Imbimbo, B. P, Villetti, G, Pietrini, V, Polonelli, L, Del Signore, S, Smith, K. M, Ferrante, R. J, & Ottonello, S. (2007) Conformation-sensitive Antibodies against Alzheimer Amyloid-beta by Immunization with a Thioredoxin-constrained B-cell Epitope Peptide, The Journal of Biological Chemistry, 282, 11436-11445. doi: 10.1074/jbc.M609690200; iris: 11381/2295833

Pietrini, V, Moretto, N, Rivetti, C, Bolchi, A, Baroc, M, Polonelli, L, Villetti, G, Imbimbo, B, & Ottonello, S. (2006) Conformational-sensitive antibodies against Alzheimer’s Ab42 produced by thioredoxin display of the Ab15 peptide, Clinical Neuropathology, 25, 152-152. iris: 11381/1874096

Grassi, F, Moretto, N, Rivetti, C, Cellai, S, Betti, M, Marquez, A, Maraini, G, & Ottonello, S. (2006) Structural and functional properties of lengsin, a pseudo-glutamine synthetase in the transparent human lens, Biochemical and Biophysical Research Communications, 350, 424-429. doi: 10.1016/j.bbrc.2006.09.062; iris: 11381/1507154

Crampton, N, Bonass, W, Kirkham, J, Rivetti, C, & Thomson, N. (2006) Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy, Nucleic Acids Research, 34, 5416-5425. doi: 10.1093/nar/gkl668; iris: 11381/1507153

Sansone, F, Dudic, M, Donofrio, G, Rivetti, C, Baldini, L, Casnati, A, Cellai, S, & Ungaro, R. (2006) DNA Condensation and Cell Transfection Properties of Guanidinium Calixarenes: Dependence on Macrocycle Lipophilicity, Size, and Conformation, Journal of the American Chemical Society, 128, 14528-14536. doi: 10.1021/ja0634425; iris: 11381/1507155

Sushko, M, Shluger, A, & Rivetti, C. (2006) Simple model for DNA adsorption onto a mica surface in 1:1 and 2:1 electrolyte solutions, Langmuir, 22, 7678-7688. doi: 10.1021/la060356+; iris: 11381/1507156

Ferrari, R, Rivetti, C, & Dieci, G. (2004) Transcription reinitiation properties of bacteriophage T7 RNA polymerase, Biochemical and Biophysical Research Communications, 315, 376-380. iris: 11381/2298601

Ferrari, R, Rivetti, C, Acker, J, & Dieci, G. (2004) Distinct roles of transcription factors TFIIIB and TFIIIC in RNA polymerase III transcription reinitiation, Proceedings of the National Academy of Sciences of the United States of America, 101, 13442-13447. doi: 10.1073/pnas.0403851101; iris: 11381/1441044

Ceci, P, Cellai, S, Falvo, E, Rivetti, C, Rossi, G. L, & Chiancone, E. (2004) DNA condensation and self-aggregation of Escherichia coli DPS are coupled phenomena related to the properties of the N-terminus, Nucleic Acids Research, 32 (19), 5935-5944. iris: 11381/1442968

Rivetti, C, Vannini, N, & Cellai, S. (2003) Imaging transcription complexes with the Atomic Force Microscope, Italian Journal of Biochemistry, 52, 98-103. iris: 11381/1460814

Ruotolo, R, Grassi, F, Percudani, R, Rivetti, C, Martorana, D, Maraini, G, & Ottonello, S. (2003) Gene expression profiling in human age-related nuclear cataract, Molecular Vision, 9, 538-548. iris: 11381/1460817

Rivetti, C, Codeluppi, S, Dieci, G, & Bustamante, C. (2003) Visualizing RNA extrusion and DNA wrapping in transcription elongation complexes of bacterial and eukaryotic RNA polymerases, Journal of Molecular Biology, 326, 1413-1426. iris: 11381/1452326

Rivetti, C, & Guthold, M. (2003) Single DNA molecule analysis of transcription complexes. Methods Enzymol, Methods in Enzymology, 371, 34-50. iris: 11381/1460812.1

Petrucco, S, Volpi, G, Bolchi, A, Rivetti, C, & Ottonello, S. (2002) A nick-sensing DNA 3’ repair enzyme from Arabidopsis, The Journal of Biological Chemistry, 277, 23675-23683. iris: 11381/1448251

Bruno, S, Bonaccio, M, Bettati, S, Rivetti, C, Viappiani, C, Abbruzzetti, S, & Mozzarelli, A. (2001) High and low oxygen affinity conformations of T state hemoglobin, Protein Science, 10, 2401-2407. doi: 10.1110/ps.20501; iris: 11381/2297386

Rivetti, C, & Codeluppi, S. (2001) Accurate length determination of DNA molecules visualized by Atomic Force Microscopy: evidence for a partial B- to A-form transition on mica, Ultramicroscopy, 87, 55-66. iris: 11381/1460809

Zambonelli, A, Rivetti, C, Percudani, R, & Ottonello, S. (2000) TuberKey: a DELTA-based tool for the description and interactive identification of truffles, Mycotaxon, 74, 57-76. iris: 11381/1459227

Guthold, M, Zhu, X, Rivetti, C, Yang, G, Thomson, N. H, Kasas, S, Hansma, H. G, Smith, B, Hansma, P. K, & Bustamante, C. (1999) One-dimensional diffusion and transcription by E. coli RNA polymerase observed with the Scanning Force Microscope, Biophysical Journal, 77, 2284-2294. iris: 11381/1460807

Guthold, M, Zhu, X, Rivetti, C, Yang, G, Thomson, N. H, Kasas, S, Hansma, H. G, Smith, B, Hansma, P. K, & Bustamante, C. (1999) Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase, Biophysical Journal, 77, 2284-2294. doi: 10.1016/S0006-3495(99)77067-0; iris: 11381/2934951

Rivetti, C, Guthold, M, & Bustamante, C. (1999) Wrapping of DNA around the E. coli RNA polymerase open promoter complex, Embo Journal, 18, 4464-4475. iris: 11381/1460808

Rivetti, C, Walker, C, & Bustamante, C. (1998) Polymer Chain Statistics and Conformational Analysis of DNA Molecules with Bends or Sections of Different Flexibility, Journal of Molecular Biology, 280, 41-59. iris: 11381/1511341

Conti, E, Rivetti, C, Wonacott, A, & Brick, P. (1998) X-ray and Spectrophotometric Studies of the Binding of proflavin to the S1 Specificity Pocket of Human alpha-Thrombin, FEBS Letters, 425, 229-233. iris: 11381/1511340

Bustamante, C, Rivetti, C, & Keller, D. J. (1997) Scanning Force Microscopy Under Aqueous Solution, Current Opinion in Structural Biology, 7, 709-716. iris: 11381/1511344

Mozzarelli, A, Rivetti, C, Rossi, G. L, Eaton, W, & Eric, R. (1997) Allosteric effectors do not alter the oxygen affinity of hemoglobin crystals, Protein Science, 6, 484-489. iris: 11381/1493856

Mozzarelli, A, Bettati, S, Rivetti, C, Rossi, G. L, Colotti, G, & Chiancone, E. (1996) Cooperative oxygen binding to Scapharca inaequivalvis hemoglobin in the crystal, The Journal of Biological Chemistry, 271, 3627-3632. iris: 11381/1493859

Rivetti, C, Guthold, M, & Bustamante, C. (1996) Scanning Force Microscopy of DNA Deposited Onto Mica: Equilibration Versus Kinetic Trapping Studied by Statistical Polymer Chain Analysis, Journal of Molecular Biology, 264, 919-932. iris: 11381/1511346

Bustamante, C, & Rivetti, C. (1996) Visualizing Protein-Nucleic Acid Interactions on a Large Scale with the Scanning Force Microscope, Annual Review of Biophysics and Biomolecular Structure, 25, 395-429. iris: 11381/1511343

Kavanaugh, J, Chafin, D, Arnone, A, Mozzarelli, A, Rivetti, C, Rossi, G. L, Kwiatkowski, L, & Noble, R. (1995) Structure and oxygen affinity of crystalline DesArg 141alpha human hemoglobin A in the T state, Journal of Molecular Biology, 248, 136-150. iris: 11381/1493871

Chen, L, Mathews, F, Davidson, V, Tegoni, M, Rivetti, C, & Rossi, G. L. (1993) Preliminary Crystal Structure Studies of a Ternary Electron Transfer Complex between a Quinoprotein, a Blue Copper Protein and a c-type Cytochrome, Protein Science, 2, 147-154. iris: 11381/1493876

Rivetti, C, Mozzarelli, A, Rossi, G. L, Kwiatkowski, L, Wierzba, A, & Noble, R. (1993) Effect of chloride on oxygen binding to crystals of hemoglobin Rothschild (ß37 Trp->Arg) in the T quaternary structure, Biochemistry, 32, 6411-6418. iris: 11381/1493879

Rivetti, C, Mozzarelli, A, Rossi, G. L, Henry, E, & Eaton, W. (1993) Oxygen binding by single crystals of hemoglobin, Biochemistry, 32, 2888-2906. iris: 11381/1493878

Rossi, G. L, Mozzarelli, A, Peracchi, A, & Rivetti, C. (1992) Time course of chemical and structural events in protein crystals measured by microspectrophotometry, Philosophical Transactions of the Royal Society of London Series A: Physical Sciences and Engineering, 340, 191-207. iris: 11381/1511383

Mozzarelli, A, Rivetti, C, Rossi, G. L, Henry, E, & Eaton, W. (1991) Crystals of haemoglobin with the T quaternary structure bind oxygen noncooperatively with no Bohr effect, Nature, 351, 416-419. iris: 11381/1493882

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